With tax at source you are taxed only on your Swiss salary, but the tax declaration asks for worldwide assets and income. The estimate is also only based on your Swiss salary. If you have substantial assets and other income then your final bill can be 3x more than the estimate.
Also, are you sure that it is your final bill? Around this time of year they send the geminde tax paymement slips that you need to pay in advance. They send me one payment slip for the full amount, and then another to pay an installment. I almost had a heart attack when I thought I had to pay both payments