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Now for one of my long winding missives. I suggest a cuppa...
MG'sD,
In the majority of cases, the behavior you describe (reactivity to other dogs, fear aggression, etc.) is rooted in fear, in lack of confidence, in uncertainty. The behavior is only the symptom. True, one must manage the behavior, but in order to change that behavior, one must ultimately address the root cause.
I am not a trainer, but I have a bit of experience with this behavior. I had a severely fear aggressive dog, and now have a (98% reformed) reactive one, and one who is still learning to handle his emotions - and a few other assorted nutcases. Since I do not know you or your dog, since I cannot see exactly what is happening, - and since I am not a pro - it would be wrong - and possibly dangerous - to try to diagnose your dog's issues via t'internet. The following is what I have done in similar situations - please take from my experience what might seem appropriate and useful when working with your dog.
And - please enlist the help of a qualified trainer or behaviorist. Having a skilled professional on hand, someone who can see the big picture, has helped me immensely. That my Hooligan is now my Angel (well, 98% angel) is due to the help and support of my trainer.
Now - as above, FA and reactivity are rarely linked to 'dominance'. A dominant/alpha dog is one who is completely comfortable in his own skin - and needs no external validation from you or any other animal. Rather, FA and reactivity are the opposite of dominant behavior - a dog who is afraid, has no self-confidence, has not learned the skills he needs to get along in this world. Lacking all that, he reverts to inappropriate behavior because he does not know what else to do.
Using popular 'dominance' methods on a FA or reactive dog can be harmful. Both to your dog and to you. Please do not go this route.
As many of you know, I strongly disapprove of the methods popularized by certain television entertainers. (Victoria Stillwell is an exception - I've come to like her, and most of what she does.) Please consult true behavior experts, such as Turid Rugaas, Patricia McConnell, Ian Dunbar, Sophia Yin, et. all.
I'll follow up with a reading list...
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From my experience:
My Hooligan did not receive any socialization or training whatsoever as a pup. Basically, she was left to run wild on a farm for her first year, never seeing any other dogs other than her mother and siblings. Her first time off the farm she was attacked by a German Shepherd and badly injured. And a few days later she came into her first estrus, and was sequestered away from the world for the duration of her cycle.
So we had: lack of early socialization, traumatic experience, hormones in over-drive, no opportunity for good experiences immediately after the trauma. Oh, and a this crazy lady with a bunch of equally crazy collies scooped her up and brought her to live in a strange place to boot. Then during her first outing after her injuries healed and she was out of season, a dog she didn't know came barging towards her (one of the 'He just wants to play!' brigade

). She panicked.
What we had was a perfect storm of events - suddenly my mildly under-socialized dog became full-blown reactive to unknown dogs.
The following is a very much condensed version of the rehab programs I've used.
First - any behavioral change takes time. And changing the root cause takes even longer. So I follow a two pronged program: management of the dog's environment in the short term , and long term work towards rehabilitation. The short term management is necessary to keep my dog, and everyone around us, safe, and to give me the time necessary to work on rehab.
So... management:
First is ensuring that my dog does not get the chance to 'practice' her reactivity. Every time a dog goes into reactive or FA mode, the adrenaline kicks in - adrenaline is itself a reward. The dog sees that whatever 'threat' triggered the reactive behavior has gone away, and he files that information away in his brain. So the next time that threat appears, the dog remembers: "Last time I barked and lunged and the scary strange dog went away - it worked, I must do that again." And so the dog learns from experience, ingraining the behavior.
So I tried to not give my dog opportunities to practice the behavior . Toward that end I needed to:
- identify situations that might trigger reactivity, and
- avoid them in the short run
Identifying triggers:
I watch my dog carefully, paying attention to body language. Do you have Turid Rugaas' 'Calming Signals'? If not, this is an excellent primer on reading canine body language. Watch for the first signs of tension, heightened alertness - this is an indicator that the dog is starting to feel uncomfortable. Make note of everything that is happening when your dog shows these initial signs - when you see a pattern, you have likely found a trigger.
For instance, I initially thought that my dog was afraid of all unknown dogs. But further observation narrowed it down: eventually I realized that she was afraid of dogs using a hard-eyed stare, and all German Shepherds. In situations where she had enough room between her and the threat, she did not react. When the threat came within a certain distance, she panicked.
So now on walks at the sight of a dog on the horizon I watched my girl, and I watched the other dog. At the first sign of discomfort we arc'ed wide around, keeping well away. If I could not arc around, we turned and went the other way. She was never given an opportunity to 'practice' reactive behavior.
Secondly, I gave her opportunities for safe socialization. I only had her meet other dogs in our Hundeschule, steady dogs chosen by our trainer. We went quite slow - first merely observing other dogs play from a distance, then coming a bit closer, then polite controlled greetings, then when she was finally ready, play. When a new dog came into the group, back to square one. Over time, she learned how to cope with meeting new dogs.
I could not have done this outside the Hundeschule simply because I cannot control that environment - mostly the 'He just wants to play!' owners. With my girl, I felt it best that all socialization took place in a safe context - at that point walks out and about were on lead, with no direct contact with unknown dogs. We went out at times and to places where 'threats' were unlikely to be encountered. The idea was to set Hooligan up for success - she needed good experiences to build on. Five years on we continue to take classes, largely for the social aspect, and will do so for years to come.
(My girl lived then with three other dogs, quite happily - so she already had plenty of canine contact day to day.)
So - managing the environment means identifying what causes your dog's reactive behavior, not giving the dog opportunities to practice the bad behavior, and setting her up for success in other encounters.
I also manage the home environment with an eye to safety. All my doors have baby gates at the hallway. The dogs cannot get beyone the gate, so when the doorbell rings there is no chance of a dog charging a visitor, even the friendly ones in play. And when necessary during the rehab of some of my dogs, I have instituted a no visitors policy. At one point, I had disconnected the bell and put a sign on the door telling people to call me first. This gave me time to get everyone organized and safe in the event of an unexpected visit. If someone had to come in the house, I would put the dogs in another room first, behind another babygate, give them each a filled kong or other treat to settle them. Absolutely no chances are taken with visitors to the house.
(Okay, I've lived like a hermit at times...

)
And... Rehab:
As mentioned, the behavior is only the symptom, I needed to address why my dog reacted as she did. After much discussion with my trainer, we agreed that fear lay at the root of her outburts. I needed to
Show her that she had no reason to be afraid, because I was in charge, I would handle whatever came up - she had no need to. And,
Show her that the things that she found threatening were not so scary.
The first was largely a matter of combining my management strategies above with watching my own body language. I needed to project a calm, confident air. Head up, shoulders back, non-reactive myself (even in the face of a charging GSD

). If I saw that her body language was starting to look uncomfortable, I stepped in front of her, blocking view of the 'threat'. I kept her focus on me, kept her engaged with me, rather than fixating on the threat. Once she learned that she could trust me to keep her safe, she started to relax a bit.
More important - I worked on distracting and changing the association. At the start, the sight of a trigger meant 'Danger!" - I needed her to start to see the trigger as meaning something else. So I paired the sight of a trigger with an extremely high value treat, one that only came out in these situations. I used ostrich sticks, as my girl is highly food oriented, but other people use a reward like a special ball, or toy. The idea is the distractor has to be just about the best thing ever - so good that the dog takes her mind off the 'threat'. A few thousand iterations of this, and eventually my girl started to see a trigger as meaning treat time rather than 'Danger!'.
Timing is key here. I needed to distract my dog long before her adrenaline kicked in. Once the stress took over and adrenaline was pumping it was too late - she would have been in no state to focus on me, or to learn anything. So I had to learn to read her body language like a book. At the first minute sign I needed to distract her. This took a bit of practice - and here is where my trainer was a huge help. A third set of eyes helped me get my timing right.
Now, all of this was done while still keeping her at a safe distance. Slowly, ever so slowly I started reducing the distance from the threat. If my girl reacted I had gone too far, too fast, and I knew I had to go back a step. We go at Hooligan's pace. This is extremely important. Going too fast can result in flooding, causing a dog to shut down.
I also added in additional non-food rewards. My girl loves doing tricks; eventually when I arc'd around away from a trigger I would ask her to perform a trick routine as the threat walked by - this keeps her focused on me and off the threat - and is something she sees as rewarding. This has the added benefit of strengthening our bond.
---
I'll admit, it hasn't always been easy, I've made many mistakes along the way, shed more than a few tears and on occasion contemplated drinking my wine cellar dry. But then I look at how far we have come and I feel so proud of her. We are five years on now, and my girl can calmly walk by most dogs. She even initiates play moves once in a while. GSDs are still iffy - but we continue to work at that.
Key things: I need eyes in the back of my head - I cannot engage in wool-gathering on walks, I need to be aware of what is going on around me at all times. After all, my girl is counting on me to be in charge.

Safety is always on my mind. The specific techniques you use are best discussed with a professional after observation of you and your dog - the course of actions should always be tailored to the individual.
I set my expectations appropropriately. My girl will likely never be able to play happily with all and sundry, it would be wrong to expect that of her. No, my goal for her is to be able to calmly walk by other dogs, ignoring them. Play is reserved for the dogs she knows and feels comfortable with. So long as she has sufficient social opportunities with other dogs, her own housemates and selected friends, that is enough.
If despite my efforts my girl has a bit of a relapse I don't dwell on it, other than to add to my check list of things to watch. I don't show her that I am disappointed (with either myself or with her), I keep calm and carry on. Tomorrow is another day, we start afresh.
---
Anyway, despite the length of this missive, this is the very much shortened version of our lives in the past five years. If you think any of this rings a bell or might help, feel free to PM me anytime. Been there, done that - I understand what you are going through.
Wishing you and your lovely dog all the very best.